【2023　原著論文】

Z. Li, M. Mizuno,T. Ejiri, S. Hayashi,H. Kandori,Y. Mizutani*
"Unique Vibrational Characteristics and Structures of the Photoexcited Retinal Chromophore in Ion-Pumping Rhodopsins"
J. Phys. Chem. B 127,46, 9873–9886 (2023)
10.1021/acs.jpcb.3c02146

Y. Katada, K. Yoshida, N. Serizawa, D. Lee, K. Kobayashi, K. Negishi, H. Okano, H. Kandori, K. Tsubota, T. Kurihara
"Highly sensitive visual restoration and protection via ectopic expression of chimeric rhodopsin in mice"
iScience 26(10), 107716
10.1016/j.isci.2023.107716

T. Iwata, Y. Kurahashi, I Made Mahaputra Wijaya, H. Kandori
"Spectroscopic investigation of Na+-dependent conformational changes of a cyclobutane pyrimidine dimer-repairing deoxyribozyme"
ACS Omega 2023, 8, 40, 37274–37281
10.1021/acsomega.3c05083

S. Tajima, Y. S. Kim, M. Fukuda, Y. Jo, P. Y. Wang, J. M. Paggi, M. Inoue, E. F. X. Byrne, K. E. Kishi, S. Nakamura, C. Ramakrishnan, S. Takaramoto, T. Nagata, M. Konno, M. Sugiura, K. Katayama, T. E. Matsui, K. Yamashita,
S. Kim, H. Ikeda, J. Kim, H. Kandori, R. O. Dror, K. Inoue, K. Deisseroth*, H. E. Kato*
"Structural basis for ion selectivity in potassium-selective channelrhodopsins"
Cell, 2023 186(20), 4325–4344.e26.
10.1016/j.cell.2023.08.009

M. Singh, M. Hashimoto, K. Katayama, Y. Furutani, H. Kandori*
"Internal Proton Transfer in the Activation of Heliorhodopsin"
J. Mol. Biol. 2023, 168273
10.1016/j.jmb.2023.168273

A. Wu, D. Salom, J. D. Hong, A. Tworak, K. Watanabe, E. Pardon, J. Steyaert, H. Kandori, K. Katayama*, P. D. Kiser*, K. Palczewski*
"Structural basis for the allosteric modulation of rhodopsin by nanobody binding to its extracellular domain"
Nat. Commun. 14 (1), 5209, 2023
10.1038/s41467-023-40911-9

H. Hagio, W. Koyama, S. Hosaka, A. Deniz Song, J. Narantsatsral, K. Matsuda, T. Shimizu, S. Hososhima, S. P. Tsunoda, H. Kandori, M. Hibi*
"Optogenetic manipulation of neuronal and cardiomyocyte functions in zebrafish using microbial rhodopsins and adenylyl cyclases"
eLife 12, e83975
10.7554/eLife.83975

M. Singh, S. Ito, S. Hososhima, R. Abe-Yoshizumi, S. P. Tsunoda, K. Inoue, H. Kandori*
"Light-Driven Chloride and Sulfate Pump with Two Different Transport Modes"
J. Phys. Chem B. 2023, 127(32):7123-7134
10.1021/acs.jpcb.3c02116

S. Tomida, A. Wada, Y. Furutani*
"Protonation of Asp116 and distortion of an all-trans retinal chromophore in Krokinobacter eikastus rhodopsin 2 causes a redshift in absorption maximum upon dehydration"
Photochem. Photobiol. Sci.
10.1007/s43630-023-00464-8

T. Nishikino, A. Hijikata, S. Kojima, T. Shirai, M. Kainosho, M. Homma, Y. Miyanoiri*
"Changes in the hydrophobic network of the FliGMC domain induce rotational switching of the flagellar motor"
iScience 26(8), 107320
10.1016/j.isci.2023.107320

M. Sugiura, M. Singh, S. P Tsunoda, H. Kandori*
"A Novel Color Switch of Microbial Rhodopsin"
Biochemistry, 2023, 62(13), 2013–2020
10.1021/acs.biochem.3c00131

S. Ochiai, Y. Ichikawa, S. Tomida, Y. Furutani*
"Covalent Bond between Lys-255 Residue and the Main Chain is Responsible for Stable Retinal Chromophore Binding and Sodium-Pumping Activity of Krokinobacter Rhodopsin 2"
Biochemistry 62 (12), 1849-1857
10.1021/acs.biochem.3c00168

S. Inukai, K. Katayama*, M Koyanagi, A. Terakita, H. Kandori*
"Investigating the Mechanism of Photoisomerization in Jellyfish Rhodopsin with the Counterion at an Atypical Position"
Journal of Biological Chemistry, 299 (6), 104726, 2023
10.1016/j.jbc.2023.104726

S. Hososhima, S. Ueno, S. Okado, K. Inoue, M. Konno, Y. Yamauchi, K. Inoue, H. Terasaki, H. Kandori, S. P. Tsunoda*
"A light-gated cation channel with high reactivity to weak light"
Scientific Reports, 13(1), 7625
10.1038/s41598-023-34687-7

S. Hanai, T. Nagata, K. Katayama, S. Inukai, M. Koyanagi, K. Inoue, A. Terakita, H. Kandori*
"Difference FTIR Spectroscopy of Jumping Spider Rhodopsin-1 at 77 K"
Biochemistry 2023, 62, 8, 1347–1359
10.1021/acs.biochem.3c00022

A. Otomo, M. Mizuno, K. Inoue, H. Kandori, Y. Mizutani*
"Protein dynamics of a light-driven Na+ pump rhodopsin probed using a tryptophan residue near the retinal chromophore"
Biophys. PhysicoBiol. 20 Issue Supplemental Article ID: e201016
10.2142/biophysico.bppb-v20.s016

S. Suzuki, S. Kumagai, T. Nagashima, T. Yamazaki, T. Okitsu, A. Wada, A. Naito, K. Katayama, K. Inoue, H. Kandori, I. Kawamura*
"Characterization of retinal chromophore and protonated Schiff base in Thermoplasmatales archaeon heliorhodopsin using solid-state NMR spectroscopy"
Biophys Chem.296, 106991-106998, 2023
10.1016/j.bpc.2023.106991

S. Arikawa, T. Sugimoto, T. Okitsu, A. Wada, K. Katayama, H. Kandori, I. Kawamura*
"Solid-state NMR for the characterization of retinal chromophore and Schiff base in TAT rhodopsin embedded in membranes under weakly acidic conditions"
Biophys. PhysicoBiol. 20, e201017_1-e201017_8, 2023
10.2142/biophysico.bppb-v20.s017

A. Chazan, I. Das, T. Fujiwara, S. Murakoshi, A. Rozenberg, A. Molina-Márquez, F. K. Sano, T. Tanaka, P. Gómez-Villegas, S. Larom, A. Pushkarev, P. Malakar, M. Hasegawa, Y. Tsukamoto, T. Ishizuka, M. Konno, T. Nagata, Y. Mizuno, K. Katayama, R, Abe-Yoshizumi, S. Ruhman, K. Inoue, H. Kandori, R. León, W. Shihoya*, S. Yoshizawa*, M. Sheves*, O. Nureki*, O. Béjà*
"Phototrophy by antenna-containing rhodopsin pumps in aquatic environments"
Nature 615, 535-540 (2023)
10.1038/s41586-023-05774-6

K. J. Fujimoto*, F. Minowa, M. Nishina, S. Nakamura, S. Ohashi, K. Katayama, H. Kandori*, T. Yanai
"Molecular mechanism of spectral tuning by chloride binding in monkey green sensitive visual pigment"
J. Phys. Chwm. Lett. 14 (7), 1784-1793, 2023
10.1021/acs.jpclett.2c03619

M. Hashimoto, K. Miyagawa, M. Singh, K. Katayama, M. Shoji*, Y. Furutani, Y. Shigeta, H. Kandori*
"Specific Zinc binding to heliorhodopsin"
Phys. Chem. Chem. Phys. 25 (4), 3535-3543, 2023
10.1039/d2cp04718g

【2023　総説・著書】

T. Yamashita,S. P. Tsunoda
"Welcome to the borderless rhodopsin world"
Biophysics and Physicobiology Vol. 20, e200044 (2023)
10.2142/biophysico.bppb-v20.0044

杉浦雅大*
「新たな世界を共に拓こう！～生物物理若手の会への誘い」
羊土社, 実験医学, 2023年9月号 Vol.41 No.14

錦野達郎*、宮ノ入洋平
「高圧NMR測定による細菌べん毛モータータンパク質FliGの構造変化がモーターの回転方向を決定する分子機構の解明」
高圧力の科学と技術 Vol. 33, No. 2 (2023)
10.4131/jshpreview.33.83

S. Kojima, M. Homma, H. Kandori
"Purification of the Na+-Driven PomAB Stator Complex and Its Analysis Using ATR-FTIR Spectroscopy"
Springer chaptere9? 95-107
10.1007/978-1-0716-3060-0_9